Genome-Wide Characterization, Expression Profile Analysis of WRKY Family Genes in Santalum album and Functional Identification of Their Role in Abiotic Stress.
Identifieur interne : 000939 ( Main/Exploration ); précédent : 000938; suivant : 000940Genome-Wide Characterization, Expression Profile Analysis of WRKY Family Genes in Santalum album and Functional Identification of Their Role in Abiotic Stress.
Auteurs : Haifeng Yan [République populaire de Chine] ; Mingzhi Li [République populaire de Chine] ; Yuping Xiong [République populaire de Chine] ; Jianming Wu [République populaire de Chine] ; Jaime A. Teixeira Da Silva [Japon] ; Guohua Ma [République populaire de Chine]Source :
- International journal of molecular sciences [ 1422-0067 ] ; 2019.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Facteurs de transcription, Protéines végétales, Santalum.
- physiologie : Santalum.
- Phylogenèse, Régulation de l'expression des gènes végétaux, Stress physiologique, Tolérance au sel, Transcriptome.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : Plant Proteins, Transcription Factors.
- genetics : Santalum.
- physiology : Santalum.
- Gene Expression Regulation, Plant, Phylogeny, Salt Tolerance, Stress, Physiological, Transcriptome.
Abstract
WRKY proteins are a large superfamily of transcription factors that are involved in diverse biological processes including development, as well as biotic and abiotic stress responses in plants. WRKY family proteins have been extensively characterized and analyzed in many plant species, including Arabidopsis, rice, and poplar. However, knowledge on WRKY transcription factors in Santalum album is scarce. Based on S. album genome and transcriptome data, 64 SaWRKY genes were identified in this study. A phylogenetic analysis based on the structures of WRKY protein sequences divided these genes into three major groups (I, II, III) together with WRKY protein sequences from Arabidopsis. Tissue-specific expression patterns showed that 37 SaWRKY genes were expressed in at least one of five tissues (leaves, roots, heartwood, sapwood, or the transition zone), while the remaining four genes weakly expressed in all of these tissues. Analysis of the expression profiles of the 42 SaWRKY genes after callus was initiated by salicylic acid (SA) and methyl jasmonate (MeJA) revealed that 25 and 24 SaWRKY genes, respectively, were significantly induced. The function of SaWRKY1, which was significantly up-regulated by SA and MeJA, was analyzed. SaWRKY1 was localized in the nucleus and its overexpression improved salt tolerance in transgenic Arabidopsis. Our study provides important information to further identify the functions of SaWRKY genes and to understand the roles of SaWRKY family genes involved in the development and in SA- and MeJA-mediated stress responses.
DOI: 10.3390/ijms20225676
PubMed: 31766135
PubMed Central: PMC6888422
Affiliations:
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Teixeira Da Silva</name><affiliation wicri:level="1"><nlm:affiliation>P.O. Box 7, Miki-cho Post Office, Miki-cho, Ikenobe 3011-2, Kagawa-ken 761-0799, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>P.O. Box 7, Miki-cho Post Office, Miki-cho, Ikenobe 3011-2, Kagawa-ken 761-0799</wicri:regionArea><wicri:noRegion>Kagawa-ken 761-0799</wicri:noRegion></affiliation></author><author><name sortKey="Ma, Guohua" sort="Ma, Guohua" uniqKey="Ma G" first="Guohua" last="Ma">Guohua Ma</name><affiliation wicri:level="1"><nlm:affiliation>Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, the Chinese Academy of Sciences, Guangzhou 510650, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, the Chinese Academy of Sciences, Guangzhou 510650</wicri:regionArea><placeName><settlement type="city">Jiangmen</settlement><region type="province">Guangdong</region></placeName></affiliation></author></analytic><series><title level="j">International journal of molecular sciences</title><idno type="eISSN">1422-0067</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Gene Expression Regulation, Plant (MeSH)</term><term>Phylogeny (MeSH)</term><term>Plant Proteins (genetics)</term><term>Salt Tolerance (MeSH)</term><term>Santalum (genetics)</term><term>Santalum (physiology)</term><term>Stress, Physiological (MeSH)</term><term>Transcription Factors (genetics)</term><term>Transcriptome (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Facteurs de transcription (génétique)</term><term>Phylogenèse (MeSH)</term><term>Protéines végétales (génétique)</term><term>Régulation de l'expression des gènes végétaux (MeSH)</term><term>Santalum (génétique)</term><term>Santalum (physiologie)</term><term>Stress physiologique (MeSH)</term><term>Tolérance au sel (MeSH)</term><term>Transcriptome (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Santalum</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Facteurs de transcription</term><term>Protéines végétales</term><term>Santalum</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Santalum</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Santalum</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Expression Regulation, Plant</term><term>Phylogeny</term><term>Salt Tolerance</term><term>Stress, Physiological</term><term>Transcriptome</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Phylogenèse</term><term>Régulation de l'expression des gènes végétaux</term><term>Stress physiologique</term><term>Tolérance au sel</term><term>Transcriptome</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">WRKY proteins are a large superfamily of transcription factors that are involved in diverse biological processes including development, as well as biotic and abiotic stress responses in plants. WRKY family proteins have been extensively characterized and analyzed in many plant species, including Arabidopsis, rice, and poplar. However, knowledge on WRKY transcription factors in <i>Santalum album</i> is scarce. Based on <i>S. album</i> genome and transcriptome data, 64 <i>SaWRKY</i> genes were identified in this study. A phylogenetic analysis based on the structures of WRKY protein sequences divided these genes into three major groups (I, II, III) together with WRKY protein sequences from Arabidopsis. Tissue-specific expression patterns showed that 37 <i>SaWRKY</i> genes were expressed in at least one of five tissues (leaves, roots, heartwood, sapwood, or the transition zone), while the remaining four genes weakly expressed in all of these tissues. Analysis of the expression profiles of the 42 <i>SaWRKY</i> genes after callus was initiated by salicylic acid (SA) and methyl jasmonate (MeJA) revealed that 25 and 24 <i>SaWRKY</i> genes, respectively, were significantly induced. The function of <i>SaWRKY1</i>, which was significantly up-regulated by SA and MeJA, was analyzed. <i>SaWRKY1</i> was localized in the nucleus and its overexpression improved salt tolerance in transgenic Arabidopsis. Our study provides important information to further identify the functions of <i>SaWRKY</i> genes and to understand the roles of <i>SaWRKY</i> family genes involved in the development and in SA- and MeJA-mediated stress responses.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">31766135</PMID><DateCompleted><Year>2020</Year><Month>04</Month><Day>17</Day></DateCompleted><DateRevised><Year>2020</Year><Month>04</Month><Day>17</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1422-0067</ISSN><JournalIssue CitedMedium="Internet"><Volume>20</Volume><Issue>22</Issue><PubDate><Year>2019</Year><Month>Nov</Month><Day>13</Day></PubDate></JournalIssue><Title>International journal of molecular sciences</Title><ISOAbbreviation>Int J Mol Sci</ISOAbbreviation></Journal><ArticleTitle>Genome-Wide Characterization, Expression Profile Analysis of WRKY Family Genes in <i>Santalum album</i> and Functional Identification of Their Role in Abiotic Stress.</ArticleTitle><ELocationID EIdType="pii" ValidYN="Y">E5676</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.3390/ijms20225676</ELocationID><Abstract><AbstractText>WRKY proteins are a large superfamily of transcription factors that are involved in diverse biological processes including development, as well as biotic and abiotic stress responses in plants. WRKY family proteins have been extensively characterized and analyzed in many plant species, including Arabidopsis, rice, and poplar. However, knowledge on WRKY transcription factors in <i>Santalum album</i> is scarce. Based on <i>S. album</i> genome and transcriptome data, 64 <i>SaWRKY</i> genes were identified in this study. A phylogenetic analysis based on the structures of WRKY protein sequences divided these genes into three major groups (I, II, III) together with WRKY protein sequences from Arabidopsis. Tissue-specific expression patterns showed that 37 <i>SaWRKY</i> genes were expressed in at least one of five tissues (leaves, roots, heartwood, sapwood, or the transition zone), while the remaining four genes weakly expressed in all of these tissues. Analysis of the expression profiles of the 42 <i>SaWRKY</i> genes after callus was initiated by salicylic acid (SA) and methyl jasmonate (MeJA) revealed that 25 and 24 <i>SaWRKY</i> genes, respectively, were significantly induced. The function of <i>SaWRKY1</i>, which was significantly up-regulated by SA and MeJA, was analyzed. <i>SaWRKY1</i> was localized in the nucleus and its overexpression improved salt tolerance in transgenic Arabidopsis. Our study provides important information to further identify the functions of <i>SaWRKY</i> genes and to understand the roles of <i>SaWRKY</i> family genes involved in the development and in SA- and MeJA-mediated stress responses.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Yan</LastName><ForeName>Haifeng</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning 530007, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Mingzhi</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Biodata Biotechnology Co., Ltd, Hefei 230031, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Xiong</LastName><ForeName>Yuping</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, the Chinese Academy of Sciences, Guangzhou 510650, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wu</LastName><ForeName>Jianming</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning 530007, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Teixeira da Silva</LastName><ForeName>Jaime A</ForeName><Initials>JA</Initials><AffiliationInfo><Affiliation>P.O. Box 7, Miki-cho Post Office, Miki-cho, Ikenobe 3011-2, Kagawa-ken 761-0799, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ma</LastName><ForeName>Guohua</ForeName><Initials>G</Initials><Identifier Source="ORCID">0000-0001-8884-2453</Identifier><AffiliationInfo><Affiliation>Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, the Chinese Academy of Sciences, Guangzhou 510650, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>11</Month><Day>13</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Int J Mol Sci</MedlineTA><NlmUniqueID>101092791</NlmUniqueID><ISSNLinking>1422-0067</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014157">Transcription Factors</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="Y">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D055049" MajorTopicYN="N">Salt Tolerance</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032123" MajorTopicYN="N">Santalum</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013312" MajorTopicYN="N">Stress, Physiological</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014157" MajorTopicYN="N">Transcription Factors</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D059467" MajorTopicYN="N">Transcriptome</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">MeJA (methyl jasmonate)</Keyword><Keyword MajorTopicYN="N">SA (salicylic acid)</Keyword><Keyword MajorTopicYN="N">WRKY transcription factor</Keyword><Keyword MajorTopicYN="N">salt tolerance</Keyword><Keyword MajorTopicYN="N">sandalwood</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>10</Month><Day>09</Day></PubMedPubDate><PubMedPubDate 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sortKey="Li, Mingzhi" sort="Li, Mingzhi" uniqKey="Li M" first="Mingzhi" last="Li">Mingzhi Li</name><name sortKey="Ma, Guohua" sort="Ma, Guohua" uniqKey="Ma G" first="Guohua" last="Ma">Guohua Ma</name><name sortKey="Wu, Jianming" sort="Wu, Jianming" uniqKey="Wu J" first="Jianming" last="Wu">Jianming Wu</name><name sortKey="Xiong, Yuping" sort="Xiong, Yuping" uniqKey="Xiong Y" first="Yuping" last="Xiong">Yuping Xiong</name></country><country name="Japon"><noRegion><name sortKey="Teixeira Da Silva, Jaime A" sort="Teixeira Da Silva, Jaime A" uniqKey="Teixeira Da Silva J" first="Jaime A" last="Teixeira Da Silva">Jaime A. 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